Welcome to PAModelpy
====================

The PAModelpy package is designed to integrate protein constraints and protein sectors into protein allocation models (PAMs).
In this documentation, you can find all the information you need to build and analyze PAMs.

.. toctree::
   :maxdepth: 2
   :caption: Table of Contents

   introduction.md
   PAM_setup_guide.md
   example.md

.. toctree::
   :maxdepth: 1
   :caption: API reference

   api_reference/CatalyticEvent.md
   api_reference/Constraints.md
   api_reference/Enzyme.md
   api_reference/EnzymeSectors.md
   api_reference/PAMValidator.md
   api_reference/PAModel.md
   api_reference/configuration.md